Extract executables by typing "tar xvf omcBPPS1.0.tar"

A linux version of the program is in the omcbpps1.0/bin directory.

The executable 'omcBPPS' was compiled under a RedHat 5.9 Linux operating system 
(kernelrelease 2.6.18-371.1.2.el5) running on an Intel Xeon x86_64 machine.

Type ./omcBPPS for usage.  The input multiple sequence alignment needs to be 
in cma format. The fa2cma program can be used to convert from fasta alignment 
format to cma.  Example input alignments are provide. The omcBPPS program can be 
applied to these from the examples directory using the ./run_* scripts. 

Reference:
    Neuwald, A.F. 2014. A Bayesian sampler for optimization of protein domain hierarchies.
    Journal of Computational Biology 21(3):269-286

Extract executable by typing "tar xvf evalBPPS1.0.tar"

A linux version of the program is in the evalbpps1.0/bin directory.

The executable 'evalBPPS' was compiled under a RedHat 5.9 Linux operating system
(kernelrelease 2.6.18-371.1.2.el5) running on an Intel Xeon x86_64 machine.

Type ./evalBPPS for usage.  The input files correspond to the output files created
by the omcBPPS program.  evalBPPS compares the results from different omcBPPS runs
on the same input multiple sequence alignment.  For details regarding the evalBPPS
program, see the following reference.

Reference:
    Neuwald, A.F. 2014. Evaluating, comparing and interpreting protein domain hierarchies.
    Journal of Computational Biology 21(4): 287-302.


For further information contact:
 Andrew F. Neuwald
 Institute for Genome Sciences and
 Department of Biochemistry & Molecular Biology
 University of Maryland School of Medicine
 Baltimore, MD 21201
 Tel: 410-706-6724; E-mail: aneuwald@som.umaryland.edu
 Home page: http://www.medschool.umaryland.edu/profiles/Neuwald-Andrew